WebFailed to execute command: Try specifying your dssp version with the -ver ... gmx do_dssp -f final.xtc -s md.tpr -n index.ndx -o ss.xpm -sc scount.xvg -tu ns the process starts but no output is ... WebDec 18, 2024 · I believe you need to install dssp separately and add it to your path yourself. I don't think dssp is included with ProDy. The same applies for ClustalW, which we also …
6. Analysis — Practical 13: AdK Tutorial 1.0 documentation
Webthe DSSP output file. class Bio.PDB.DSSP.DSSP (model, in_file, dssp = 'dssp', acc_array = 'Sander', file_type = 'PDB') ¶ Bases: Bio.PDB.AbstractPropertyMap.AbstractResiduePropertyMap. Run DSSP and parse secondary structure and accessibility. Run DSSP on a pdb file, and provide a handle to … WebThe DSSP algorithm is the standard method for assigning secondary structure to the ... it was shown that DSSP failed to annotate many "cryptic" π helices, which are commonly … snowboard and bindings package deals
dssp executable is not found in one of system paths #976 - Github
WebJan 15, 2024 · Created attachment 273425 full dmesg output I see on bootup: Jan 05 23:32:10 light0 kernel: ACPI Error: [DSSP] Namespace lookup failure, AE_NOT_FOUND (20240728/psargs-364) Jan 05 23:32:10 light0 kernel: ACPI Error: Method parse/execution failed \_SB.PCI0.SAT0.SPT1._GTF, AE_NOT_FOUND (20240728/psparse-550) Jan 05 … WebMay 1, 2024 · I have aligned it with respect to other PDB files and the alignment seems to be fine, however I get the error: DSSP failed to produce an output Is there anything … Web-o, --output filename The file name of a DSSP file to create. If the filename ends in .gz or .bz2 a compressed file is created. -v, --verbose Write out diagnositic information. --version Print the version number and exit. -h, --help Print the help message and exit. The directory containing the parser scripts for mrs. snowboard animated pictures